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 traumatic brain injury


Why Former NFL All-Pros Are Turning to Psychedelics

WIRED

Research into whether drugs like ayahuasca can mitigate the effects of traumatic brain injury is in its infancy. Pro athletes like the Buffalo Bills' Jordan Poyer are forging ahead anyway. Roam the wide-open halls and cavernous showrooms of the Colorado Convention Center during Psychedelic Science, the world's largest psychedelics conference, and you'll see exhibitors hawking everything from mushroom jewelry, to chewable gummies containing extracts of the psychoactive succulent plant kanna, to broad flat-brim baseball caps emblazoned with "MDMA" and "IBOGA." Booths publicize organizations such as the Ketamine Taskforce and the Psychedelic Parenthood Community, and even, a live-action feature film looking to attract investors. It's a motley, multifarious symposium where indigenous-plant-medicine healers mingle with lanyard-clad pharma-bros, legendary underground LSD chemists, and workaday stoners tottering around in massive red and white toadstool hats that make them look like that cute little mushroom guy from . And yet, oddest among such oddities may be the sight of enormously burly NFL tough guys talking candidly about their feelings.


A Brain Age Residual Biomarker (BARB): Leveraging MRI-Based Models to Detect Latent Health Conditions in U.S. Veterans

Bousquet, Arthur, Banerji, Sugata, Conneely, Mark F., Jamshidi, Shahrzad

arXiv.org Artificial Intelligence

Age prediction using brain imaging, such as MRIs, has achieved promising results, with several studies identifying the model's residual as a potential biomarker for chronic disease states. In this study, we developed a brain age predictive model using a dataset of 1,220 U.S. veterans (18--80 years) and convolutional neural networks (CNNs) trained on two-dimensional slices of axial T2-weighted fast spin-echo and T2-weighted fluid attenuated inversion recovery MRI images. The model, incorporating a degree-3 polynomial ensemble, achieved an $R^{2}$ of 0.816 on the testing set. Images were acquired at the level of the anterior commissure and the frontal horns of the lateral ventricles. Residual analysis was performed to assess its potential as a biomarker for five ICD-coded conditions: hypertension (HTN), diabetes mellitus (DM), mild traumatic brain injury (mTBI), illicit substance abuse/dependence (SAD), and alcohol abuse/dependence (AAD). Residuals grouped by the number of ICD-coded conditions demonstrated different trends that were statistically significant ($p = 0.002$), suggesting a relationship between disease states and predicted brain age. This association was particularly pronounced in patients over 49 years, where negative residuals (indicating advanced brain aging) correlated with the presence of multiple ICD codes. These findings support the potential of residuals as biomarkers for detecting latent health conditions.


Predicting Mortality and Functional Status Scores of Traumatic Brain Injury Patients using Supervised Machine Learning

Steinmetz, Lucas, Maheshwari, Shivam, Kazanjian, Garik, Loyson, Abigail, Alexander, Tyler, Margapuri, Venkat, Nataraj, C.

arXiv.org Artificial Intelligence

Traumatic brain injury (TBI) presents a significant public health challenge, often resulting in mortality or lasting disability. Predicting outcomes such as mortality and Functional Status Scale (FSS) scores can enhance treatment strategies and inform clinical decision-making. This study applies supervised machine learning (ML) methods to predict mortality and FSS scores using a real-world dataset of 300 pediatric TBI patients from the University of Colorado School of Medicine. The dataset captures clinical features, including demographics, injury mechanisms, and hospitalization outcomes. Eighteen ML models were evaluated for mortality prediction, and thirteen models were assessed for FSS score prediction. Performance was measured using accuracy, ROC AUC, F1-score, and mean squared error. Logistic regression and Extra Trees models achieved high precision in mortality prediction, while linear regression demonstrated the best FSS score prediction. Feature selection reduced 103 clinical variables to the most relevant, enhancing model efficiency and interpretability. This research highlights the role of ML models in identifying high-risk patients and supporting personalized interventions, demonstrating the potential of data-driven analytics to improve TBI care and integrate into clinical workflows.


Enhanced Prediction of Ventilator-Associated Pneumonia in Patients with Traumatic Brain Injury Using Advanced Machine Learning Techniques

Ashrafi, Negin, Abdollahi, Armin, Pishgar, Maryam

arXiv.org Artificial Intelligence

Background: Ventilator-associated pneumonia (VAP) in traumatic brain injury (TBI) patients poses a significant mortality risk and imposes a considerable financial burden on patients and healthcare systems. Timely detection and prognostication of VAP in TBI patients are crucial to improve patient outcomes and alleviate the strain on healthcare resources. Methods: We implemented six machine learning models using the MIMIC-III database. Our methodology included preprocessing steps, such as feature selection with CatBoost and expert opinion, addressing class imbalance with the Synthetic Minority Oversampling Technique (SMOTE), and rigorous model tuning through 5-fold cross-validation to optimize hyperparameters. Key models evaluated included SVM, Logistic Regression, Random Forest, XGBoost, ANN, and AdaBoost. Additionally, we conducted SHAP analysis to determine feature importance and performed an ablation study to assess feature impacts on model performance. Results: XGBoost outperformed the baseline models and the best existing literature. We used metrics, including AUC, Accuracy, Specificity, Sensitivity, F1 Score, PPV, and NPV. XGBoost demonstrated the highest performance with an AUC of 0.940 and an Accuracy of 0.875, which are 23.4% and 23.5% higher than the best results in the existing literature, with an AUC of 0.706 and an Accuracy of 0.640, respectively. This enhanced performance underscores the models' effectiveness in clinical settings. Conclusions: This study enhances the predictive modeling of VAP in TBI patients, improving early detection and intervention potential. Refined feature selection and advanced ensemble techniques significantly boosted model accuracy and reliability, offering promising directions for future clinical applications and medical diagnostics research.


Self-calibrated convolution towards glioma segmentation

Salvagnini, Felipe C. R., Barbosa, Gerson O., Falcao, Alexandre X., Santos, Cid A. N.

arXiv.org Artificial Intelligence

Accurate brain tumor segmentation in the early stages of the disease is crucial for the treatment's effectiveness, avoiding exhaustive visual inspection of a qualified specialist on 3D MR brain images of multiple protocols (e.g., T1, T2, T2-FLAIR, T1-Gd). Several networks exist for Glioma segmentation, being nnU-Net one of the best. In this work, we evaluate self-calibrated convolutions in different parts of the nnU-Net network to demonstrate that self-calibrated modules in skip connections can significantly improve the enhanced-tumor and tumor-core segmentation accuracy while preserving the wholetumor segmentation accuracy.


Discovery of Generalizable TBI Phenotypes Using Multivariate Time-Series Clustering

Ghaderi, Hamid, Foreman, Brandon, Reddy, Chandan K., Subbian, Vignesh

arXiv.org Artificial Intelligence

Traumatic Brain Injury (TBI) presents a broad spectrum of clinical presentations and outcomes due to its inherent heterogeneity, leading to diverse recovery trajectories and varied therapeutic responses. While many studies have delved into TBI phenotyping for distinct patient populations, identifying TBI phenotypes that consistently generalize across various settings and populations remains a critical research gap. Our research addresses this by employing multivariate time-series clustering to unveil TBI's dynamic intricates. Utilizing a self-supervised learning-based approach to clustering multivariate time-Series data with missing values (SLAC-Time), we analyzed both the research-centric TRACK-TBI and the real-world MIMIC-IV datasets. Remarkably, the optimal hyperparameters of SLAC-Time and the ideal number of clusters remained consistent across these datasets, underscoring SLAC-Time's stability across heterogeneous datasets. Our analysis revealed three generalizable TBI phenotypes ({\alpha}, \b{eta}, and {\gamma}), each exhibiting distinct non-temporal features during emergency department visits, and temporal feature profiles throughout ICU stays. Specifically, phenotype {\alpha} represents mild TBI with a remarkably consistent clinical presentation. In contrast, phenotype \b{eta} signifies severe TBI with diverse clinical manifestations, and phenotype {\gamma} represents a moderate TBI profile in terms of severity and clinical diversity. Age is a significant determinant of TBI outcomes, with older cohorts recording higher mortality rates. Importantly, while certain features varied by age, the core characteristics of TBI manifestations tied to each phenotype remain consistent across diverse populations.


Machine Learning Applications in Traumatic Brain Injury: A Spotlight on Mild TBI

Ellethy, Hanem, Chandra, Shekhar S., Vegh, Viktor

arXiv.org Artificial Intelligence

Traumatic Brain Injury (TBI) poses a significant global public health challenge, contributing to high morbidity and mortality rates and placing a substantial economic burden on healthcare systems worldwide. The diagnosis of TBI relies on clinical information along with Computed Tomography (CT) scans. Addressing the multifaceted challenges posed by TBI has seen the development of innovative, data-driven approaches, for this complex condition. Particularly noteworthy is the prevalence of mild TBI (mTBI), which constitutes the majority of TBI cases where conventional methods often fall short. As such, we review the state-of-the-art Machine Learning (ML) techniques applied to clinical information and CT scans in TBI, with a particular focus on mTBI. We categorize ML applications based on their data sources, and there is a spectrum of ML techniques used to date. Most of these techniques have primarily focused on diagnosis, with relatively few attempts at predicting the prognosis. This review may serve as a source of inspiration for future research studies aimed at improving the diagnosis of TBI using data-driven approaches and standard diagnostic data.


Enhancing mTBI Diagnosis with Residual Triplet Convolutional Neural Network Using 3D CT

Ellethy, Hanem, Chandra, Shekhar S., Vegh, Viktor

arXiv.org Artificial Intelligence

Mild Traumatic Brain Injury (mTBI) is a common and challenging condition to diagnose accurately. Timely and precise diagnosis is essential for effective treatment and improved patient outcomes. Traditional diagnostic methods for mTBI often have limitations in terms of accuracy and sensitivity. In this study, we introduce an innovative approach to enhance mTBI diagnosis using 3D Computed Tomography (CT) images and a metric learning technique trained with triplet loss. To address these challenges, we propose a Residual Triplet Convolutional Neural Network (RTCNN) model to distinguish between mTBI cases and healthy ones by embedding 3D CT scans into a feature space. The triplet loss function maximizes the margin between similar and dissimilar image pairs, optimizing feature representations. This facilitates better context placement of individual cases, aids informed decision-making, and has the potential to improve patient outcomes. Our RTCNN model shows promising performance in mTBI diagnosis, achieving an average accuracy of 94.3%, a sensitivity of 94.1%, and a specificity of 95.2%, as confirmed through a five-fold cross-validation. Importantly, when compared to the conventional Residual Convolutional Neural Network (RCNN) model, the RTCNN exhibits a significant improvement, showcasing a remarkable 22.5% increase in specificity, a notable 16.2% boost in accuracy, and an 11.3% enhancement in sensitivity. Moreover, RTCNN requires lower memory resources, making it not only highly effective but also resource-efficient in minimizing false positives while maximizing its diagnostic accuracy in distinguishing normal CT scans from mTBI cases. The quantitative performance metrics provided and utilization of occlusion sensitivity maps to visually explain the model's decision-making process further enhance the interpretability and transparency of our approach.


Linking Symptom Inventories using Semantic Textual Similarity

Kennedy, Eamonn, Vadlamani, Shashank, Lindsey, Hannah M, Peterson, Kelly S, OConnor, Kristen Dams, Murray, Kenton, Agarwal, Ronak, Amiri, Houshang H, Andersen, Raeda K, Babikian, Talin, Baron, David A, Bigler, Erin D, Caeyenberghs, Karen, Delano-Wood, Lisa, Disner, Seth G, Dobryakova, Ekaterina, Eapen, Blessen C, Edelstein, Rachel M, Esopenko, Carrie, Genova, Helen M, Geuze, Elbert, Goodrich-Hunsaker, Naomi J, Grafman, Jordan, Haberg, Asta K, Hodges, Cooper B, Hoskinson, Kristen R, Hovenden, Elizabeth S, Irimia, Andrei, Jahanshad, Neda, Jha, Ruchira M, Keleher, Finian, Kenney, Kimbra, Koerte, Inga K, Liebel, Spencer W, Livny, Abigail, Lovstad, Marianne, Martindale, Sarah L, Max, Jeffrey E, Mayer, Andrew R, Meier, Timothy B, Menefee, Deleene S, Mohamed, Abdalla Z, Mondello, Stefania, Monti, Martin M, Morey, Rajendra A, Newcombe, Virginia, Newsome, Mary R, Olsen, Alexander, Pastorek, Nicholas J, Pugh, Mary Jo, Razi, Adeel, Resch, Jacob E, Rowland, Jared A, Russell, Kelly, Ryan, Nicholas P, Scheibel, Randall S, Schmidt, Adam T, Spitz, Gershon, Stephens, Jaclyn A, Tal, Assaf, Talbert, Leah D, Tartaglia, Maria Carmela, Taylor, Brian A, Thomopoulos, Sophia I, Troyanskaya, Maya, Valera, Eve M, van der Horn, Harm Jan, Van Horn, John D, Verma, Ragini, Wade, Benjamin SC, Walker, Willian SC, Ware, Ashley L, Werner, J Kent Jr, Yeates, Keith Owen, Zafonte, Ross D, Zeineh, Michael M, Zielinski, Brandon, Thompson, Paul M, Hillary, Frank G, Tate, David F, Wilde, Elisabeth A, Dennis, Emily L

arXiv.org Artificial Intelligence

An extensive library of symptom inventories has been developed over time to measure clinical symptoms, but this variety has led to several long standing issues. Most notably, results drawn from different settings and studies are not comparable, which limits reproducibility. Here, we present an artificial intelligence (AI) approach using semantic textual similarity (STS) to link symptoms and scores across previously incongruous symptom inventories. We tested the ability of four pre-trained STS models to screen thousands of symptom description pairs for related content - a challenging task typically requiring expert panels. Models were tasked to predict symptom severity across four different inventories for 6,607 participants drawn from 16 international data sources. The STS approach achieved 74.8% accuracy across five tasks, outperforming other models tested. This work suggests that incorporating contextual, semantic information can assist expert decision-making processes, yielding gains for both general and disease-specific clinical assessment.


Identifying TBI Physiological States by Clustering Multivariate Clinical Time-Series Data

Ghaderi, Hamid, Foreman, Brandon, Nayebi, Amin, Tipirneni, Sindhu, Reddy, Chandan K., Subbian, Vignesh

arXiv.org Artificial Intelligence

Determining clinically relevant physiological states from multivariate time series data with missing values is essential for providing appropriate treatment for acute conditions such as Traumatic Brain Injury (TBI), respiratory failure, and heart failure. Utilizing non-temporal clustering or data imputation and aggregation techniques may lead to loss of valuable information and biased analyses. In our study, we apply the SLAC-Time algorithm, an innovative self-supervision-based approach that maintains data integrity by avoiding imputation or aggregation, offering a more useful representation of acute patient states. By using SLAC-Time to cluster data in a large research dataset, we identified three distinct TBI physiological states and their specific feature profiles. We employed various clustering evaluation metrics and incorporated input from a clinical domain expert to validate and interpret the identified physiological states. Further, we discovered how specific clinical events and interventions can influence patient states and state transitions.